Fragments detected

Elements in strains

A side

B side

Element

Start, bp

End, bp

Flanking genes

Direction

Fragment size

Comigrant*

Fragment size

Comigrant*

MG1655

CGSC6300

TD2

TD10

IS1-1

19811

20508

b0020-b0023

-

272

199

IS1-2

P^†

P

P

P

IS1-2

278402

279099

b0263-b0266

-

174

191

IS1-1

P

P

P

P

IS1-3

289873

290570

b0273-b0276

-

171

IS1-2

577

P

P

P

P

IS1-4

1049056

1049753

b0987-b0989

+

281

IS1-1

139

P

P

P

P

IS1-5

1976542

1977239

b1892-b1895

-

452

226

P

P

IS1-6

3581114

3581811

b3443-b3446

+

712

1020

P

P

P

P

IS1-7

4516095

4516370

b4293-b4295

+

1354

575

IS1-3

P

P

P

P

IS2-1

380530

381803

b0359-b0362

+

308

841

P

P

P

P

IS2-2

1465945

1467218

b1401-b1405

-

194

203

IS2-4

P

P

P

P

b1579 transposase

1649536

1650732

b1578-b1580

+

778

P

P

P

P

IS2-3

2066974

2068247

b1995-b1998

-

287

IS2-1

444

P

P

P

P

IS2-4

2994394

2995622

b2859-b2862

-

589

219

P

P

P

P

IS2-5

3184203

3185431

b3043-b3046

+

410

672

P

P

P

P

IS2-6

4495795

4497068

b4271-b4274

+

204

IS2-2

163

P

P

P

P

IS3-1

390963

391829

b0371-b0373

-

489

IS3-4

142

P

P

P

P

IS3-2

566361

567227

b0540-b0542

+

787

346

P

P

P

P

IS3-3

1093498

1094364

b1025-b1027

-

1009

772

P

P

P

P

IS3-4

2168554

2169420

b2088-b2090

+

502

842

P

P

P

P

IS3-5

314811

315677

b0298-b0300

+

863

158

IS2-1

P

P

P

P

IS4

4499671

4500999

b4277-b4279

-

629

450

P

P

P

P

IS5-1

273325

274341

b0258-b0260

-

489

IS5-5

497

P

P

P

P

IS5-2

573960

574976

b0551-b0553

-

590

1605

P

P

P

P

IS5-3

687220

688236

b0655-b0657

-

348

420

IS5-8

P

P

P

P

IS5-4

1394100

1395116

b1330-b1332

+

569

IS5-2

471

IS5-1

(P)^‡

(P)

(P)

(P)

IS5-5

1425770

1426750

b1369-b1371

-

491

1543

P

P

P

P

IS5-6

2064327

2065343

b1993-b1995

-

747

1210

P

P

P

P

IS5-7

2099917

2100933

b2029-b2031

-

306

303

P

P

P

P

IS5-8

2287085

2288101

b2191-b2193

-

314

IS5-7

411

P

P

P

P

IS5-9

3128193

3129209

b2981-b2983

+

1085

672

P

P

P

P

IS5-10

3363337

3364353

b3217-b3219

-

207

1126

P

P

P

P

IS5-11

3649812

3650828

b3504-b3506

-

734

IS5-6

1335

P

P

P

P

IS30-1

269827

270978

b0255-b0257

+

720

314

P

P

P

P

IS30-2

1467382

1468533

b1401-b1405

+

305

297

P

P

P

P

IS30-3

4505034

4506185

b4283-b4285

-

405

766

P

P

P

P

Intergenic Region

279155

279328

b0265-b0266

254

P

P

P

P

IS150

3718309

3719678

b3556-b3559

+

195

176

P

P

P

P

IS186-1

15445

16557

b0015-b0017

+

503

1501

P

P

P

P

IS186-2

607288

608400

b0581-b0583

+

2204

417

P

P

P

P

IS186-3

2512345

2513463

b2393-b2395

+

764

667

P

P

P

P

Additional Elements

IS1-a

257908

b0240

-

1488

738

P

IS1-b

335460

b0319-b0326

-

609

309

P

IS1-c

1871063

b1786

-

1211

484

P

IS1-d

2037484

b1970-b1971

+

617

IS1-b

1066

P

P

IS1-e

2623548

b2502

+

282

IS1-4

368

P

P

IS1-f

2768501

b2635

+

1608

544

P

P

P

IS1-g

3275070

b3130

+

529

2117

P

P

IS1-h

4539642

b4313

-

175

IS1-2

1119

P

P

IS2-a

1588558

b1506

+

765

717

P

P

IS2-b

2927499

b2796

+

138

348

P

P

IS3-a

331175

b0314-b0315

+

1002

IS3-3

563

P

b0805 region

838781

b0805

+

530

P

P

P

IS3-c

2460317

b2351

+

489

IS3-4

1642

P

P

IS3-d

3427623

b3280

-

1004

553

IS3-a

P

P

IS3-e

3776882

b3604

-

1435

935

IS3-e

P

P

P

IS3-f

4466303

b4242

-

640

935

IS3-f

P

P

P

IS5-a

1102866

b1040

+

365

400

P

P

IS30-a

2246187

b2156

-

303

IS30-2

445

P

P

P

IS30-b

4115565

b3927

-

692

186

P

P

IS186-a

4541184

b4314

-

606

534

P

P