Databases

Candida Albicans | Saccharomyces | Other Organisms | Nucleic Acid | Protein | References | Alignment | Methods

Candida Albicans

• Candida Genome Database
• Proteome Databases
• Candida albicans physical map
• Genolevures Yeast Genome Comparison Project
• Candida BLAST data for assembly 6 ORFs
• Stanford Microarray Database
• Blast to candida ORFS or CONTIGs
• Stanford C. albicans sequencing contigs (assembly 6)
• Stanford C. albicans Assembly 19 supercontigs
• ftp to Candida ORFs
• Candida albicans information
• Candida Sequencing at Stanford
• Candida albicans Sequencing Project
• Candida fluorescent protein primers
• Candida albicans microarray database from the Brown lab
• CandidaDB a Candida database from the Galar Fungail Consortium
• Chromasome assignments from the NRC arrays
• Candida Annotation Website
• Agabian Lab Website including Candida annotation
• Candida microarray database at the University of Minnesota
• Candida albicans database at the Canadian Biotechnology Research Institute
• Candida oligomer microarrays University of Washington

Saccharomyces Cerevisiae

• Saccharomyces Genome Database
• Saccharomyces Genome Deletion Project
• Saccharomyces Cell Cycle Expression Database
• Yeast WWW Virtual Library
• Proteome Databases
• S. cerevisiae Promoter Database at CSHL
• MIPS Yeast Genome Project
• Genolevures Yeast Genome Comparison Project
• Yale Genome Analysis Center
• Yeast Protein Interaction Map Project
• Database of Interacting Proteins (DIP)
• Biochemical Network Internet resources
• Compendium of Expression Profiles at RII
• Stanford Microarray Database
• S. cerevisiae microarray data analysis
• Saccharomyces cerevisiae Protein Comparisons
• XREFdb
• NCRR Yeast Resource Center in Seattle
• Saccharomyces Transcriptional Regulatory Networks
• Chromatin Regulation of Gene Expression
• Biomolecular Interaction Network Database (BIND)
• Yeast Protein Complex Database at Cellzome
• MDS Proteomics mass spectrometry proteomics
• An Introduction to the Genetics and Molecular Biology of the Yeast Saccharomyces cerevisiae by Fred Sherman
• Yeast GFP Fusion Localization Database

Other Organisms

• Stanford Microarray Database
• Model Organisms for Biomedical Research
• S. pombe Project at The Sanger Centre
• Caenorhabditis elegans WWW Server
• Caenorhabditis elegans Genetics and Genomics
• Chlamydomonas EST Database at Kazusa
• The Plasmodium Genome Resource

Nucleic Acid

• GenBank at NCBI
• TRANSFAC Database
• TFSEARCH Database
• GeneScape Portal (GeneCalling, PathCalling, etc.)
• GenomeNet WWW Server at Kyoto
• Eukaryotic Promoter Database
• VectorDB
• Microbial Genome Database at TIGR
• Sequence Gazing at Nature Genetics
• MIRAGE Database at IFTI
• TelDB
• Telomeres at the Cech Lab
• Primers3 primer design
• ORF finder
• RNA & DNA folding apps (mfold, etc.)

Protein

• Protein secondary structure prediction
• ExPASy (PROSITE, SWISS-PROT, etc.)
• Protein Information Resource
• Protein Data Bank at RCSB
• Histone Database
• Green Flourescent Protein Applications Page
• UMBER DbBrowser (PRINTS, OWL, etc.)
• PhosphoBase
• Pfam at WashU
• SBASE protein domain library
• ProDom
• OGlycBase
• ProClass
• BioMagResBank
• Protein-Protein Interaction Prediction
• Database of Interacting Proteins (DIP)

References

• National Biotechnology Information Facility
• Entrez-PubMed
• PubCrawler
• Biological Journals and Abbreviations
• SearchLight Sciences
• OVID
• NAR Biological Database Issue
• Cellular Process Network resources
• Cell Biology WWW Virtual Library
• Cytokines Online Pathfinder Encyclopaedia
• CRISP Database
• Community of Science Database
• BIOSCI Electronic Newsgroup Network
• Chemistry Database Links
• bioinformatics Resources at the U of MN numerous bioinformatics resources
• NAR Bioinformatics websites list 131 websites that perform bioinformatics computations

Pairwise Alignment

• BLAST including PHI- and PSI-blast
• BLAST 2 Sequences
• CCGB BLAST for Candida and other genomes
• BLAST for vectors
• BLOCKS at FHCRC
• BCM Pairwise Launcher (ALIGN, LFASTA, etc.)
• MTU Pairwise Alignment (SIM, GAP, etc.)
• Wise2 at The Pasteur Institute
• Sequence Manipulation Suite

Multiple Alignment

• Stormo Consensus/Patser server at Washington U.
• BCM Multiple Launcher (ClustalW, CAP, etc.)
• EMBL Computational Services (SMART, SRS5, etc.)
• DIALIGN at The Pasteur Institute
• ToPLign at GMD SCAI
• MAP at Michigan Tech
• CBRG Server at ETH-Z (AllAll, MultAlign, etc.)
• SAM at UC Santa Cruz
  

Methods & Reagents

• Michael-Christopher Keogh's Protocols
• Roche's DIG application manual
• Protocol Online
• Biotaq.com Protocol Links
• NWFSC Molecular Biology Protocols
• HHMI Lab Safety
• LabVelocity.com
• Antibody Resource Page
• ABcam
• Yeast Transformation at Gietz Lab
• Yeast Two-Hybrid Screen
• Two-hybrid assay database at the Golemis lab
• Microarrays.org
• Gene Chips: DNA Microarrays
• NIST Chemistry WebBook
• Interactive Statistical Calculation Pages
• CentrifugeHelper Conversion Program