Databases CANDIDA ALBICANS • Candida Genome Database • Stanford C. albicans sequencing contigs (assembly 6) • Candida Sequencing at Stanford • Candida albicans Sequencing Project • CandidaDB a Candida database from the Galar Fungail Consortium SACCHAROMYCES CEREVISIAE • Saccharomyces Genome Database • Saccharomyces Genome Deletion Project • Saccharomyces Cell Cycle Expression Database • MIPS Yeast Genome Project • Yeast Protein Interaction Map Project • Database of Interacting Proteins (DIP) • S. cerevisiae microarray data analysis • Saccharomyces cerevisiae Protein Comparisons • XREFdb • NCRR Yeast Resource Center in Seattle • Saccharomyces Transcriptional Regulatory Networks • Chromatin Regulation of Gene Expression • Biomolecular Interaction Network Database (BIND) • MDS Proteomics mass spectrometry proteomics • An Introduction to the Genetics and Molecular Biology of the Yeast Saccharomyces cerevisiaeby Fred Sherman OTHER ORGANISMS • Model Organisms for Biomedical Research • S. pombe Project at The Sanger Centre • Chlamydomonas EST Database at Kazusa • The Plasmodium Genome Resource NUCLEIC ACID • GenBank at NCBI • TRANSFAC Database • TFSEARCH Database • GeneScape Portal (GeneCalling, PathCalling, etc.) • GenomeNet WWW Server at Kyoto • Eukaryotic Promoter Database • Microbial Genome Database at TIGR • MIRAGE Database at IFTI • TelDB • Telomeres at the Cech Lab • ORF finder • RNA & DNA folding apps (mfold, etc.) PROTEIN • ExPASy (PROSITE, SWISS-PROT, etc.) • Protein Data Bank at RCSB • Histone Database • Green Fluorescent Protein Applications Page • UMBER DbBrowser (PRINTS, OWL, etc.) • PhosphoBase • SBASE protein domain library • OGlycBase • BioMagResBank • Protein-Protein Interaction Prediction • Database of Interacting Proteins (DIP) REFERENCES • Entrez-PubMed • PubCrawler • Biological Journals and Abbreviations • OVID • Cell Biology WWW Virtual Library • Cytokines Online Pathfinder Encyclopaedia • BIOSCI Electronic Newsgroup Network • Chemistry Database Links PAIRWISE ALIGNMENT • BLAST including PHI- and PSI-blast • BLAST 2 Sequences • BLOCKS at FHCRC • MTU Pairwise Alignment (SIM, GAP, etc.) • Sequence Manipulation Suite MULTIPLE ALIGNMENT • Stormo Consensus/Patser server at Washington U. • BCM Multiple Launcher (ClustalW, CAP, etc.) • EMBL Computational Services (SMART, SRS5, etc.) • DIALIGN at The Pasteur Institute • ToPLign at GMD SCAI • CBRG Server at ETH-Z (AllAll, MultAlign, etc.) METHODS & REAGENTS • Michael-Christopher Keogh's Protocols • Roche's DIG application manual • Protocol Online • NWFSC Molecular Biology Protocols • HHMI Lab Safety • Antibody Resource Page • ABcam • Yeast Transformation at Gietz Lab • Yeast Two-Hybrid Screen • Microarrays.org • Gene Chips: DNA Microarrays • NIST Chemistry WebBook • Interactive Statistical Calculation Pages